parameters: grpsan.par
input: xxx.cij the file containing the correlation
matrix where xxx identifies the dataset
xxx.names
file with names of series (optional)
output: here K is the reclustring step. 0 means
first clustering
xxx.ent.gsK
schedule of annealing with energies etc.
xxx.cnf.gsK
the configuration of minimal energy found (the ground state)
xxx.cls.gsK
the cluster structure of the ground state for later use
xxx.clt.gsK
the
readable cluster structure of the ground state
xxx.now.gsK
the
ground state energy at this time, and temperature
parameters: grpdet.par with a flag to allow users to run only merging, which is faster
input: xxx.cij the file containing
the correlation matrix where xxx identifies the dataset
xxx.names
file with names of series
output: xxx.smile number of clusters and energies for
the two methods
xxx.cnf.mrg
the best configuration found with the merging algorithm
xxx.cnf.det
the best configuration with deterministic minimization (if selected)
xxx.ent.det
gives the number of lattice sweeps and other info:
number of clusters, number of updates...
parameters: kmndet.par with
a flag to allow users to run only merging, which is faster, and a flag
for
choosing the average or centroid linkage algorithm
input: xxx.cij the file containing the correlation
matrix where xxx identifies the data set
xxx.names
file with names of series
output: xxx.kmile number of clusters and max. likelihood-energy
after merging,
number of cluster and max. likelihood-energy after Kmeans,
and Kmeans-energy.
xxx.cnf.avl
max-likelyhood configuration found with the merging algorithm
xxx.cnf.kmn
max-likelyhood configuration from deterministic minimization (if selected)
xxx.ent.kmn
the number of lattice sweeps and other info: number of clusters, number
of updates...
xxx.now.kmn
the ground state energy at this time with number of clusters
OBSERVE: checks for minimal energy also at intermediate moves
parameters: energy.par
input: xxx.cij the file containing
the correlation matrix where xxx identifies the data set
xxx.cnf.yyy
the file with the configuration whose energy and cluster structure
has to be computed (yyy identifies the configuration)
output: xxx.cls.yyy the cluster structure of the configuration
xxx.clt.yyy
the
readable cluster structure
xxx.cnf.yyy
the
configuration sorted according to internal energy of clusters and extraction
energy of sets
parameters: No file: prompts for the names of the data
sets (xx1 and xx2) and of two
configurations (yy1 and yy2)
input: The 2 files containing the configurations: xx1.cnf.yy1 and xx2.cnf.yy2
output: xxx.ovlps the value of overlap. Data are
appended and never canceled
parameters: grpmrg.par
input: xxx.cij the file containing the correlation
matrix where xxx identifies the data set
xxx.names
file with names of series
output: xxx.smrge the energy as a function of number of
clusters
xxx.cls.yyy
the minimal energy cluster structure of the configuration
xxx.clt.yyy
the readable cluster table
xxx.cnf.mrg the minimal energy configuration
xxx.gnup a file to be loaded with gnuplot to plot the dendrogram
xxx.tree.p0 data used by xxx.gnup (merge steps with decreasing energy)
xxx.tree.p1 data used by xxx.gnup (intermediate merge steps)
xxx.tree.p2
data used by xxx.gnup (merge steps with increasing energy)