Statistical Mechanics Group Publications
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Protein folding and Heteropolymers
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Dynamics of growing interfaces
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Disordered Systems
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Statistical Mechanics of Transport and River Networks
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Self Organized Criticality
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Anomalous Diffusion in Random Media
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Interdisciplinary Statistical Physics and Econophysics
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Other...
Protein Folding and Heteropolymers:
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Holter NS, Maritan A, Cieplak M, et al.
Dynamic modeling of gene expression data
P NATL ACAD SCI USA 98, 1693-1698 FEB 13 2001
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Lattanzi G, Maritan A
Force dependence of the Michaelis constant in a two-state ratchet model for molecular motors
PHYS REV LETT 86 (6): 1134-1137 FEB 5 2001
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Micheletti C, Seno F, Banavar JR, et al.
Learning effective amino acid interactions through iterative stochastic techniques
PROTEINS 42 (3): 422-431 FEB 15 2001
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Rossi A, Micheletti C, Seno F, et al.
A self-consistent knowledge-based approach to protein design
BIOPHYS J 80 (1): 480-490 JAN 2001
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Cieplak M, Holter NS, Maritan A, et al
Amino acid classes and the protein folding problem
J CHEM PHYS 114 (3): 1420-1423 JAN 15 2001
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Orlandini E, Seno F, Banavar JR, et al.
Deciphering the folding kinetics of transmembrane helical proteins
P NATL ACAD SCI USA 97 (26): 14229-14234 DEC 19 2000
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Giugliarelli G, Micheletti C, Banavar JR, et al.
Compactness, aggregation, and prionlike behavior of protein: A lattice model study
J CHEM PHYS 113 (12): 5072-5077 SEP 22 2000
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Micheletti C, Seno F, Maritan A
Recurrent oligomers in proteins: An optimal scheme reconciling accurate and concise backbone representations in automated folding and design studies
PROTEINS 40 (4): 662-674 SEP 1 2000
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Holter NS, Mitra M, Maritan A, et al.
Fundamental patterns underlying gene expression profiles: Simplicity from complexity
P NATL ACAD SCI USA 97 (15): 8409-8414 JUL 18 2000
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Maritan A, Micheletti C, Trovato A, et al.
Otimal shapes of compact strings
NATURE 406 (6793): 287-290 JUL 20 2000
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Banavar JR, Colaiori F, Flammini A, et al.
Topology of the fittest transportation network
PHYS REV LETT 84 (20): 4745-4748 MAY 15 2000
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Dima RI, Settanni G, Micheletti C, et al.
Extraction of interaction potentials between amino acids from native protein structures
J CHEM PHYS 112 (20): 9151-9166 MAY 22 2000
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Dima RI, Banavar JR, Maritan A
Scoring functions in protein folding and design
PROTEIN SCI 9 (4): 812-819 APR 2000
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Maritan A, Micheletti C, Banavar JR
Role of secondary motifs in fast folding polymers: A dynamical variational principle
PHYS REV LETT 84 (13): 3009-3012 MAR 27 2000
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Rossi A, Maritan A, Micheletti C
A novel iterative strategy for protein design
J CHEM PHYS 112 (4): 2050-2055 JAN 22 2000
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Clementi C, Vendruscolo M, Maritan A, et al.
Folding Lennard-Jones proteins by a contact potential
PROTEINS 37 (4): 544-553 DEC 1 1999
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Clementi C, Carloni P, Maritan A
Protein design is a key factor for subunit-subunit association
P NATL ACAD SCI USA 96 (17): 9616-9621 AUG 17 1999
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Maritan A, Riva MP, Trovato A
Heteropolymers in a solvent at an interface
J PHYS A-MATH GEN 32 (25): L275-L280 JUN 25 1999
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Micheletti C, Maritan A, Banavar JR
A comparative study of existing and new design techniques for protein models
J CHEM PHYS 110 (19): 9730-9738 MAY 15 1999
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van Mourik J, Clementi C, Maritan A, et al.
Determination of interaction potentials of amino acids from native protein structures: Tests on simple lattice models
J CHEM PHYS 110 (20): 10123-10133 MAY 22 1999
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Trovato A, Maritan A
A variational approach to the localization transition of heteropolymers at interfaces
EUROPHYS LETT 46 (3): 301-306 MAY 1 1999
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Dima RI, Banavar JR, Cieplak M, et al.
Statistical mechanics of protein-like heteropolymers
P NATL ACAD SCI USA 96 (9): 4904-4907 APR 27 1999
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Micheletti C, Banavar JR, Maritan A, et al.
Protein structures and optimal folding from a geometrical variational principle
PHYS REV LETT 82 (16): 3372-3375 APR 19 1999
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S. Lise
Phase diagram and critical behaviour of homopolymers with steric
frustration
J. Phys. A: Math. Gen. 31,6183 (1998)
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Lise S., Maritan A. Pelizzola
A. Bethe approximation for a semiflexible polymer chain
Phys. Rev. E 58, R5241 (1998)
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Seno F, Maritan A, Banavar JR
Interaction potentials for protein folding
Proteins-Structure Function And Genetics, 1998, Vol.30, No.3, pp.244-
248
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Banavar JR, Cieplak M, Maritan A, Nadig G, Seno F, Vishveshwara S
Structure-based design of model proteins
Proteins-Structure Function And Genetics, 1998, Vol.31, No.1, pp.10-
20
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Clementi C, Maritan A, Banavar JR
Folding, design, and determination of interaction potentials using
off-lattice dynamics of model heteropolymers
Physical Review Letters, 1998, Vol.81, No.15, pp.3287-3290
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F. Seno, C. Micheletti, A. Maritan, J. R. Banavar
Variational approach to protein design and extraction of interaction
potentials,
Phys. Rev. Lett. 81, 2172, (1998)
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C. Micheletti, J. R. Banavar, A. Maritan and F. Seno,
Protein structures and optimal folding emerging from a geometrical
variational principle
cond-mat/9811246
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C. Micheletti, J. R. Banavar, F. Seno and A. Maritan
Steric constraints in model proteins,
Phys. Rev. Lett. 80, 5683, (1998).
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C. Micheletti, F. Seno, A. Maritan and J. R. Banavar
Design of proteins with hydrophobic and polar amino acids,
Proteins: Structure, Function and Genetics 32, 80, (1998).
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C. Micheletti, F. Seno, A. Maritan and J. R. Banavar,
Protein Design in a Lattice Model of Hydrophobic and Polar Amino
Acids,
Phys. Rev. Lett. 80, p. 2237 (1998).
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M. Vendruscolo, A. Maritan, Jayanth R. Banavar
Stability Threshold as a Selection Principle for Protein Design
Phys. Rev. Lett. 78, 3697 (1997)
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F. Seno, M. Vendruscolo, A. Maritan, J.R. Banavar,
An Optimal Protein Design Procedure
Phys. Rev. E. submitted (1996)
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I. Shrivastava, S. Vishveshware, M. Cieplak, A. Maritan, J.R. Banavar,
Lattice Model for Rapidly Folding Protein--like Heteropolymers
Proc.Nat. Acad.Sci. 92, 9206 (1995)
Statistical Mechanics of Transport and River Networks:
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Banavar JR, Maritan A, Rinaldo A
Scaling - Rivers, blood and transportation networks - Reply
Nature, 2000, Vol.408,
pp. 6809
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Marani M, Banavar JR, Caldarelli G, Maritan A, Rinaldo A
Stationary self-organized fractal structures inan open, dissipative
electrical system
Journal Of Physics A-Mathematical And General, 1998, Vol.31, No.18,
pp.L337-L343
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Cieplak M, Giacometti A, Maritan A, Rinaldo A, RodriguezIturbe I, Banavar
JR
Models of fractal river basins
Journal Of Statistical Physics, 1998, Vol.91, No.1-2, pp.1-15
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G. Caldarelli, A. Giacometti, A. Maritan, I. Rodriguez-Iturbe, A. Rinaldo
Randomly pinned landscape evolution
Phys. Rev. E 55, R4865 (1997).
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J. R. Banavar, F. Colaiori, A. Flammini, A. Giacometti, A. Maritan, A.
Rinaldo
Sculpting of a Fractal River Basin
Phys. Rev. Lett. 78, 4522 (1997).
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F. Colaiori, A. Flammini, A. Maritna, Jayanth R. Banavar
Analytical and numerical study of optimal channel networks
Phys. Rev. E 55, 1298 (1997).
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A. Maritan, F. Colaiori, A. Flammini, M. Cieplak, J.R. Banavar,
Universality Classes of Optimal Channel Networks
Science to appear (1996).
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A. Maritan, A. Rinaldo, F. Colaiori, A. Flammini, R. Rigon, I. Rodriguez-Iturbe,
J.R. Banavar,
The Thermodynamics of Optimal Channel Networks
Phys. Rev. Lett. to appear (1996).
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G. Caldarelli, A. Giacometti, A. Maritan, I. Rodriguez-Iturbe, A. Rinaldo,
Pinning Effects in Developing of River Networks
in preparation.
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G. Caldarelli, A. Giacometti, A. Maritan, I. Rodriguez-Iturbe, A. Rinaldo,
Cellular Models for River Networks
SISSA/ISAS preprint 39/96/CM submitted to Phys. Rev. E.
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A. Maritan , M.Cieplak, A.Giacometti, A.Rinaldo, R.Iturbe and J.R. Banavar,
Statistical Mechanics of River Networks
Invited talk presented at StatPhys 95 Xiamen (China). To appear in
Physica A
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A. Maritan, A. Rinaldo, A. Giacometti, R. Rigon, I. Rodriguez--Iturbe,
Scaling Laws for River Networks
Phys Rev. E 53, 1510 (1996)
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M. Cieplak, A. Maritan, A. Giacometti, A. Rinaldo, I. Rodriguez--Iturbe,
J.R. Banavar,
Disorder Dominated River Basins
Europhys. Lett. (submitted)
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A. Giacometti, A. Maritan, J.R. Banavar,
Continuum Model for River Networ
Phys. Rev. Lett. 75, 577, (1995)
Disordered Systems:
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Cecconi F, Banavar JR, Maritan A
Scaling behavior in a nonlocal and nonlinear diffusion equation
PHYS REV E 62 (5): R5879-R5882 Part A NOV 2000
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Lise S, Maritan A, Swift MR
Langevin equations coupled through correlated noises
J PHYS A-MATH GEN 32 (28): 5251-5260 JUL 16 1999
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Cirillo ENM, Gonnella G, Troccoli M, et al.
Correlation functions by cluster variation method for Ising model with NN, NNN, and plaquette interactions
J STAT PHYS 94 (1-2): 67-89 JAN 1999
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S. Lise, M. Swift, A. Maritan and JR. Banavar
A non-equilibrium percolation transition in random Ising ferromagnets,
J. Phys. A: Math. Gen. 31,713 (1998)
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M. R. Swift, A. J. Bray, A. Maritan, M. Cieplak, J. R. Banavar
Scaling of the random-field Ising model at zero temperature
Europhys. Lett. 38, 273 (1997).
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P. De Los Rios, A. Maritan, F. Seno
Polymers with a bimodal disorder distribution and directed percolation
J. Phys. A: Math. Gen. 30, L617 (1997).
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P, De Los Rios, G. Caldarelli, A. Maritan, F.Seno,
Optimal Path and Directed Percolation
Phys. Rev. E 53, 2029, 1996
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A. Maritan, M. Cieplak, J.R. Banavar,
Nematic--Isotropic Transition in Porous Media
Liquid Crystals in Complex Geometry formed by Polymer and Porous Network
Eds. G.P. Crawford and S. Zumer, Taylor & Francis, London (1995).
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A. Maritan, M. Cieplak, T. Bellini, J.R. Banavar,
Nematic--Isotropic Transition in Porous Media
Phys. Rev. Lett. 72, 4113 (1994)
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M. Cieplak, A. Maritan, J.R. Banavar,
Optimal Path and Domain Walls in the Strong Disorder Limit
Phys. Rev. Lett. 72, 2320 (1994).
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C. Buzano, A. Maritan and A. Pelizzola,
Cluster Variation Approach to Random-Anisotropy Blume-Emery-Griffiths
Model
J. Phys. Cond. Matt. 6, 327 (1994).
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M.R. Swift, A. Maritan, M. Cieplak and J.R. Banavar,
Phase Diagram of Random Field Ising Model
J. Phys. A27, 1525 (1994).
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G. Gonnella, A. Maritan, J.R. Banavar,
Phase Diagram of Uniaxial Liquid Crystals
J. Phys. A27, L771 (1994)
Dynamics of growing interfaces:
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Banavar JR, Maritan A, Rinaldo A
Scaling - Rivers, blood and transportation networks - Reply
NATURE 408 (6809): 160-160 NOV 9 2000
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Banavar JR, Green JL, Harte J, et al.
Finite size scaling in ecology
PHYS REV LETT 83 (20): 4212-4214 NOV 15 1999
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Banavar JR, Maritan A, Rinaldo A
Size and form in efficient transportation networks
NATURE 399 (6732): 130-132 MAY 13 1999
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Cieplak M, Maritan A, Banavar JR
Optimal paths and growth processes
PHYSICA A 266 (1-4): 291-298 APR 15 1999
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C. Castellano, A. Gabrielli, M. Marsili,
M. A. Munoz, L. Pietronero
High dimensional behavior of the KPZ Growth Dynamics
Phys. Rev. E 58, R5209 (1998) (cond-mat/9809197)
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C. Castellano, M. Marsili,
L. Pietronero
Non-perturbative Renormalization of the KPZ Growth Dynamics
Phys. Rev.Lett. 80, 4830 (1998) (cond-mat/9802284)
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M. Marsili and Y.-C. Zhang,
Overhangs in Interface Growth and Ground-State Paths
Phys. Rev. E 57, 4814 (1998)
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M. Marsili, M. Vendruscolo
Growth with memory
Europhys. Lett. 37, 505 (1997).
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P. Keblinski, S.K. Kumar, A. Maritan, J.R. Banavar,
Roughening of the Liquid--Vapor Interface Induced by Phase Separation
in Thin Binary Mixture Films
Phys. Rev. Lett. in press (1996)
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A. Giacometti, A. Maritan, F. Toigo, J.R. Banavar,
Fluctuation--Dissipation Theorem and the Dynamical Renormalization
Group
J. Stat.Phys. 82, 1669 (1996)
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M. Marsili, A. Maritan, F. Toigo and J. R. Banavar,
Stochastic Growth Equations and Reparametrization Invariance
Rev. Mod. Phys. 68, 963 (1996) (cond-mat/9809197)
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P. Keblinsky, A. Maritan, F. Toigo, R. Messier and J.R. Banavar,
Continuum Model for Growth of Interfaces
Phys. Rev. E 53, 759 (1996)
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M. Marsili and A. J. Bray,
Soluble Infinite Range Model of Kinetic Roughening
Phys. Rev. Lett. 76, 2750 (1996) (cond-mat/9602032)
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M. Marsili,
Directed Polymers with Killing
J. Phys. A, 29 5405 (1996)
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M. Marsili, A. Maritan, F. Toigo and J. R. Banavar,
Interface Growth in the Presence of an Inclined Flux,
Europhys. Lett. 35, 171, (1996)
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P. Keblinski, A. Maritan, F. Toigo and J.R. Banavar,
Morphology and Scaling in Continuum Ballistic Deposition
Phys. Rev. Lett. 74, 1783 (1995).
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M.A. Moore, T. Blum, J.P. Doherty, M. Marsili, J-P. Bouchaud and P. Claudin,
Glassy Solutions of the Kardar-Parisi-Zhang Equation
Phys. Rev. Lett. 74, 4257 (1995)
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A. Giacometti, A. Maritan, F. Toigo and J.R. Banavar,
Real Space Renormalization Group for Langevin Dynamics in Absence
of Traslational Invariance
J. Stat. Phys. 79, 649 (1995).
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P. Keblisnki, W.J. Ma, A. Maritan, J. Koplik, J.R. Banavar
Domain Growth Near a Wall in Spinodal Decomposition
Phys. Rev. Lett. 72 C3738 (1994).
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M. Cieplak, A. Maritan, J.R. Banavar,
Interfacial Geometry and overhanging Configurations
J, Phys. A27, L765 (1994).
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P. Keblinski, A. Maritan, F. Toigo and J.R. Banavar,
Continuum Approach to Diffusion Limited Aggregation Type of Growth
Phys. Rev. E 49, R4795 (1994)
Self Organized Criticality:
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S. Lise and A. Stella
Boundary effects in a random neighbor model of earthquakes,
Phys. Rev. E 57,3633 (1998)
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M. Marsili and A. Valleriani,
Self Organization of Interacting Polya Urns
European Physical Journal B, 3, 417 (1998) (cond-mat/9802165)
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M. Marsili, P. De Los Rios and S. Maslov,
Expansion around the mean-field solution of the Bak-Sneppen model
Phys. Rev. Lett. 80, 1457 (1998) (cond-mat/9710152)
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P. De Los Rios, M. Marsili, M. Vendruscolo,
High-dimensional Bak-Sneppen model
Phys. Rev. Lett. 80, 5746 (1998) (cond-mat/9802069)
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S. Maslov, P. De Los Rios, M. Marsili, Y.-C. Zhang
Critical exponents of the anisotropic Bak-Sneppen model
Phys. Rev. E 58, 7141 (1998) (cond-mat/9803068)
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Vergeles, M; Maritan, A; Banavar, JR
Mean-field theory of sandpiles
Phys. Rev. E 55, 1998 (1997)
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P. Ghaffari, S. Lise, H. Jeldoft Jensen
Nonconservative sandpile models
Phys. Rev. E 56, 6702 (1997).
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G. Caldarelli, A. Maritan, M. Vendruscolo,
Hot Sandpiles
SISSA/ISAS preprint 34/96/CM submitted to Europhys. Lett.
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M. Marsili, G. Caldarelli, M. Vendruscolo,
Memory Quenched Disorder and Self Organization
Physical Review E 53, 13 (1995)
Anomalous Diffusion in Random Media:
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A. Giacometti, A. Maritan and H. Nakamishi,
Statistical Mechanics of Random Paths on Disordered Lattices
J. Stat. Phys. 75, 669 (1994).
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M. Vendruscolo, M. Marsili,
Diffusion in Disordered Media as a Process with Memory
Phys. Rev. E 54, R1021 (1996)
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A. Giacometti, A. Maritan,
Weak non Self--Averaging Behaviour for Diffusion in a Trapping Environment
Phys. Rev. E 49, 227, (1994)
Interdisciplinary Statistical Physics and Econophysics:
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D Challet, A Chessa, M Marsili and Y-C Zhang
From Minority Games to real markets
Quantitative Finance 1 No 1 (January 2001) 168-176
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Marsili M, Challet D, Zecchina R
TRADING BEHAVIOR AND EXCESS VOLATILITY IN TOY MARKETS
Advances in Complex Systems, Vol. 4, No. 1 (2001) 3-17
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Johannes Berg, Matteo Marsili, Aldo Rustichini and Riccardo Zecchina
Statistical mechanics of asset markets with private information
Quantitative Finance 1 No 2 (March 2001) 203-211
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Giada L, Marsili M
Data clustering and noise undressing of correlation matrices - art. no. 061101
PHYS REV E 6306: (6) 1101-+ Part 1 JUN 2001
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Challet D, Marsili M, Zhang YC
Stylized facts of financial markets and market crashes in Minority Games
PHYSICA A 294: (3-4) 514-524 MAY 15 2001
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De Martino A, Marsili M
Replica symmetry breaking in the minority game
J PHYS A-MATH GEN 34: (12) 2525-2537 MAR 30 2001
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Challet D, Marsili M, Zecchina R
Comment on "Thermal model for adaptive competition in a market
PHYS REV LETT 85: (23) 5008-5008 DEC 4 2000
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Castellano C, Marsili M, Vespignani A
Nonequilibrium phase transition in a model for social influence
PHYS REV LETT 85: (16) 3536-3539 OCT 16 2000
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Challet D, Marsili M
Relevance of memory in minority games
PHYS REV E 62: (2) 1862-1868 Part A AUG 2000
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Marsili M, Challet D, Zecchina R
Exact solution of a modified El Farol's bar problem: Efficiency and the role of market impact
PHYSICA A 280: (3-4) 522-553 JUN 1 2000
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Challet D, Marsili M, Zecchina R
Statistical mechanics of systems with heterogeneous agents: Minority games
PHYS REV LETT 84: (8) 1824-1827 FEB 21 2000
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Challet D, Marsili M, Zhang YC
Modeling market mechanism with minority game
PHYSICA A 276: (1-2) 284-315 FEB 1 2000
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Tehver R, Maritan A, Koplik J, et al.
Depletion forces in hard-sphere colloids
PHYS REV E 59 (2): R1339-R1342 Part A FEB 1999
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M. Marsili, Y.-C. Zhang,
Interacting Individuals Leading to Zipf's Law
Phys. Rev. Lett. 80,2741 (1998) (cond-mat/9801289)
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M. Marsili, S. Maslov, Y.-C. Zhang,
Comment on: Role of Intermittency in Urban Development
Phys. Rev. Lett.80, 4830 (1998)(cond-mat/9801290)
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M. Marsili, S. Maslov, Y.-C. Zhang,
Dynamical Optimization Theory of a Diversified Portfolio
Physica A 253,403 (1998) (cond-mat/9801239)
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G. Caldarelli, M. Marsili, Y. C. Zhang
A prototype model of stock exchange
Europhys. Lett. 40, 479 (1997)
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S. Galluccio G. Caldarelli, M. Marsili, Y. C. Zhang
Scaling in currency exchange
Physica A 245, 423 (1997).
Other:
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Swift MR, Boamfa M, Cornell SJ, Maritan A
Scale invariant correlations in a driven dissipative gas
Physical Review Letters, 1998, Vol.80, No.20, pp.4410-4413
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Tehver R, Cole MW, Maritan A, Koplik J, Banavar JR
Impurity solvation in a liquid
Journal Of Chemical Physics, 1998, Vol.108, No.5, pp.2104-2110
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M. Vergeles, A. Maritan, J. Koplik, J. R. Banavar
Adhesion of solids
Phys. Rev. E 56, 2626 (1997).
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M. R. Swift, F. Colaiori, A. Flammini, A. Maritan, A. Giacometti, J. R.
Banavar
Scaling Relationschips in Aggloreration and Annihilation Models
Phys. Rev. Lett. 79, 3278 (1997).
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A. Trovato, F. Seno
Universality for interacting oriented self-avoiding walk: A transfer
matrix calculation
Phys. Rev. E 56, 131 (1997).
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Random Aggregation and Annihilation
F. Colaiori, A. Flammini, A. Maritan, J.R. Banavar,
Phys. Rev. Lett. to appear (1996).
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Multi Parameter Mean Field Renormalization
C. Likos and A. Maritan,
Submitted for Publication.
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A. Maritan and J.R. Banavar,
Chaos, Noise and Synchronization
Phys. Rev. Lett. 72, 1451 (1994).
For informations please contact
marsili@sissa.it